We ran Impute2 separately on each collection using the entire HapMap3 reference panel to obtain genotypes at a common set of 1.3 million SNPs (see Methods).
Published in the journal: . PLoS Pathog 11(5): e32767. doi:10.1371/journal.ppat.1004894 Category: Research Article doi: https://doi.org/10.1371/journal.ppat.1004894